TODO List

Author

Affiliation

Callum Arnold-Leps

Pennsylvania State University

Data Management

• Importing data
  • CSV
  • Excel
  • R data
  • {TidierFiles.jl}
  • API with {HTTP.jl} and {Serde.jl}
  • {JLD2.jl}/{HDF5.jl}
• Exporting data
  • {JLD2.jl}/{HDF5.jl}
• Cleaning data

Analyses

• Descriptive statistics
• Univariate analysis
• Multivariate analysis & regression
• Missing data
• Standardized rates
• Time series and outbreak detection
• Epidemic modeling
• Spatial analysis
• Contact tracing
• Survival analysis
• Mixed effects models

Data Visualization

• {CairoMakie} basics
• {CairoMakie} tips
• Interactive plots with {GLMakie}
• {AlgebraOfGraphics}

Reporting & Reproducibility

• Version control
• Quarto

Miscellaneous

• Simulations with {DrWatson}
• {Revise}
  • Basics functionality
  • Using for single scripts
  • Using for modules/packages
  • Adding to startup.jl file
• Writing functions
  • Typing arguments
    • Parametric types
  • Testing
  • Documentation
  • Multiple dispatch
  • Function/Type piracy
• Developing packages
  • Modules
  • Namespaces
  • Dev local packages
  • Package registry with {LocalRegistry}
  • {PkgTemplates}
• Performance
  • Memory access (column-major vs row-major, @views())
  • Profiling
  • Multi-threading
  • Multi-processing
  • Benchmarking
  • {Bumper}
  • {DispatchDoctor}
  • Pipelines with {Dagger}
• R interoperability
  • {RCall}
  • {JuliaCall}